Senior Image Analysis Software Engineer, NGNRI

Design, develop, and maintain AI/ML-powered image analysis software supporting high-content microscopy and imaging platforms

Develop and optimize deep learning and image analysis algorithms for image segmentation, feature extraction, classification, and phenotypic analysis

Build and support scalable, high-throughput computational pipelines capable of processing large imaging datasets

Establish and maintain software quality standards through validation, testing, documentation, version control, and reproducible development practices

Collaborate with scientists, researchers, and technology teams to understand research objectives and translate scientific requirements into technical solutions

Support imaging data management, metadata standards, and long-term data accessibility and integrity in alignment with FAIR data principles

Evaluate emerging technologies, frameworks, and methodologies in image analysis, machine learning, and computational imaging to drive continuous innovation

Mentor junior engineers and contribute to a collaborative technical environment that promotes knowledge sharing and best practices

Assist with scientific communication activities, including research publications, presentations, and internal knowledge sharing

Contribute to the advancement of the organization's digital research ecosystem and image analysis capabilities

About you

Minimum Qualifications

4 years of scientific software development experience in an academic, research, or industry environment

2 years of experience developing image analysis algorithms and computational workflows

Demonstrated expertise in Python software development

Experience designing, training, and deploying deep learning models using PyTorch

Experience working with large-scale datasets and scalable computational pipelines

Experience with version control and collaborative software development practices

Strong communication skills with the ability to collaborate effectively with scientists and technical stakeholders

M.S. degree in Computer Science, Computational Biology, Bioinformatics, Data Science, or a related field

Preferred Qualifications

Ph.D. in Computer Science, Computational Biology, or a related discipline

Experience with 3D imaging, organoid imaging, or microscopy-based image analysis

Familiarity with bioimage analysis platforms and tools such as OMERO, CellProfiler, Fiji/ImageJ, scikit-image, napari, or OME-Zarr

Experience deploying software solutions within HPC, cloud, or containerized environments

Participation in open-source scientific computing or bioimage communities

Exposure to generative AI applications in scientific imaging

What you’ll get

Our team members fuel our strategy, innovation and growth, so we ensure the health and well-being of not just you, but your family, too! We go above and beyond to give you the support you need on an individual level and offer all sorts of ways to help you live your best life. We are proud to offer eligible team members perks and health benefits that will help you have peace of mind. Simply put: We’ve got your back. Check out our full list of Benefits and Perks.

About us

The Nick Gilbert Neurofibromatosis Research Institute (NGNRI) is a nonprofit organization focused on developing treatments and cures for Neurofibromatosis type 1 (NF1) and other neurological disorders and cancers with significant unmet need. Backed by the Gilbert Family Foundation and created in partnership with Michigan State University (MSU) and Henry Ford Health (HFH), NGNRI brings together leading scientific and clinical expertise to accelerate translational discovery. Located within a new, state-of-the-art research facility in midtown Detroit, NGNRI offers a highly collaborative environment alongside MSU and HFH. The institute is equipped with advanced platforms—including organoid and stem cell models, AI-driven analysis, FACS, and CRISPR technologies—and provides access to extensive shared core facilities. NGNRI supports both in-house researchers and visiting scientists, creating a dynamic, mission-driven ecosystem designed to advance innovation and deliver impact in an underserved field. As part of Detroit’s rapidly growing medical research campus, NGNRI offers a unique opportunity to contribute to cutting-edge science within a vibrant and expanding hub.

This job description is an outline of the primary responsibilities of this position and may be modified at the discretion of the company at any time. Decisions related to employment are not based on race, color, religion, national origin, sex, physical or mental disability, sexual orientation, gender identity or expression, age, military or veteran status or any other characteristic protected by state or federal law. The company provides reasonable accommodations to qualified individuals with disabilities in accordance with applicable state and federal laws. Applicants requiring reasonable accommodations in completing the application and/or participating in the application process should contact a member of the Human Resources team, at [email protected].